Use Catalogue of Life to get downstream taxa to a given taxonomic level.
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Provides the date the ITIS database was last updated.
Get full hierarchy from tsn
Search Catalogue of Life for taxonomic classifications.
Ping EOL API to see if it's working.
Get jurisdiction data, i.e., native or not native in a region.
Returns a list of the other sources used for the TSN.
Lookup-table for APGIII order names
Retrieve the taxonomic hierarchy from given EOL taxonID.
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Deprecated functions in taxize
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Table of APGIII generic names
Get the NameID codes from Tropicos for taxonomic names.
Given the identifier for a data object, return all metadata about the object.
Get accepted names from tsn
Retrieve the downstream taxa for a given taxon name or ID.
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
Get common names from tsn
Lookup details for specific names in all taxonomies in GBIF.
Get the uBio id for a search term.
Resolve names from many different sources
Get kingdom names from tsn
Search by scientific name
Retrieve immediate children taxa for a given taxon name or ID.
Search for taxonomic names using the Global Names Index.
Get description of the ITIS service
Search for any match
Search for presence of taxonomic names in EOL invasive species databases.
Retrieve gene sequences from NCBI by accession number.
Retrieve taxonomic identifiers for a given taxon name.
Retrieve gene sequences from NCBI by accession number.
getitistermsfromscientificname
Get itis terms from scientific names
Get any matching IUCN species names
Vector of 793 genus names of plants
Retrieve gene sequences from NCBI by taxon name and gene names.
getjurisdictionoriginvalues
Get jurisdiction origin values
Lookup-table for IDs of taxonomic ranks
Lookup-table for APGIII family names
Retrieve accepted TSN (with accepted name).
Retrieve gene sequences from NCBI by accession number.
Get scientific names from common names.
Search for pages in EOL database using a taxonconceptID.
Returns a list of the pulications used for the TSN.
Ping the ITIS API to see if it's working.
Vector of 1,182 species names of plants
Get taxonomic names for a given rank.
Resolve names using Global Names Resolver.
Get taxonomic names for a given taxonomic name query.
Resolve names using Global Names Recognition and Discovery.
getcredibilityratingfromtsn
Get credibility rating from tsn
Search for names in the International Plant Names Index (IPNI).
Get the BOLD (Barcode of Life) code for a search term.
Search for terms in EOL database.
Search Barcode of Life for taxonomic IDs
searchbycommonnameendswith
Search for tsn by common name ending with
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Returns a list of the synonyms (if any) for the TSN.
Get full record from TSN.
Get a summary from the IUCN Red List.
Retrieve gene sequences from NCBI by accession number.
Lookup-table for family, genus, and species names for ThePlantList
Get coverge from tsn
Get hierarchy up from tsn
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Retrieve taxonomic rank name from given TSN.
getitistermsfromcommonname
Get itis terms from common names
Convert list of classifications to a tree.
gettsnbyvernacularlanguage
Retrieve accepted TSN (with accepted name)
Return all reference records for for a taxon name with a given id.
Get all possible kingdom names
Provides a list of the unique languages used in the vernacular table.
Get hierarchy down from tsn
Search for tsn by common name
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get The Plant List families.
Return all synonyms for a taxon name with a given id.
Get sources for the Phylotastic Taxonomic Name Resolution Service.
Gets the unique LSID for the TSN, or an empty result if there is no match.
Parse taxon names using the GBIF name parser.
Return all accepted names for a taxon name with a given id.
Get kingdom names.
Aggregate data by given taxonomic rank
Search uBio for taxonomic synonyms by hierarchiesID.
Get currency from tsn
Search Catalogue of Life for taxonomic IDs
Returns the usage information for the TSN.
Return all distribution records for for a taxon name with a given id.
ubio_classification_search
This function will return ClassificationBankIDs (hierarchiesIDs) that refer to the
given NamebankID
Query Phylomatic for a phylogenetic tree.
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
Search for taxonomy data from Plantminer.com
Return all distribution records for for a taxon name with a given id.
This function will return NameBankIDs that match given search terms
Return summary data a taxon name with a given id.
Get references related to a ITIS TSN.
Search for gene sequences available for a species from NCBI.
Get common names from scientific names.
Replacement function for ldply that should be faster in all cases.
Return all synonyms for a taxon name with a given id.
Search the Phylotastic Taxonomic Name Resolution Service.
Function to parse xml data, decode strings, and return NULL if logical is zero.
Get rank for a given taxonomic name.
Get possible jurisdiction values
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Capitalize the first letter of a character string.
Get all possible geographic values
Return all reference records for for a taxon name with a given id.
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Parse scientific names using EOL's name parser.
Taxonomic information from around the web.
Return all accepted names for a taxon name with a given id.
Retrieve the taxonomic hierarchy for a given taxon ID.
Check invasive species status for a set of species from GISD database
Extractor functions for iucn
-class.
Search for taxonomic name details using the Global Names Index.
Get any match count.
Returns the review year for the TSN.
Get comment detail from TSN
Get full ITIS record for one or more ITIS TSN's or lsid's.
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
iPlant name resolution
Get core metadata from tsn
Search Tropicos by scientific name, common name, or Tropicos ID.
Get citations and licenses for data sources used in taxize
Search the CANADENSYS Vascan API.
Get The Plant List csv files.
Get the Catalogue of Life ID from taxonomic names.
Search Catalogue of Life for for direct children of a particular taxon.
Get data sources for the Global Names Resolver.
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith
and searchbycommonnameendswith
Search for any matched page
Search uBio by namebank ID.
Function to get API key.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Get the GBIF backbone taxon ID from taxonomic names.
Get expert information for the TSN.
Get the UID codes from NCBI for taxonomic names.
Get possible credibility ratings
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Lookup in the APGII taxonomy and replace family names.
Get the TSN code for a search term.
Get itis terms from common names
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
Get date data from tsn
Returns the parent TSN for the entered TSN.
Get kingdom names.
Get a random vector of species names.
Aggregate species data to given taxonomic rank