Retrieve the downstream taxa for a given taxon name or ID.
Get the BOLD (Barcode of Life) code for a search term.
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Get scientific names from common names.
Table of APGIII generic names
Get full hierarchy from tsn
Search Catalogue of Life for taxonomic IDs
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Search for terms in EOL database.
Get itis terms from common names
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Lookup-table for APGIII order names
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
Get the uBio id for a search term.
Search for pages in EOL database using a taxonconceptID.
Retrieve gene sequences from NCBI by accession number.
getcredibilityratingfromtsn
Get credibility rating from tsn
Lookup in the APGII taxonomy and replace family names.
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith
and searchbycommonnameendswith
getjurisdictionoriginvalues
Get jurisdiction origin values
Get the Catalogue of Life ID from taxonomic names.
Returns the review year for the TSN.
Get all possible kingdom names
Get all possible geographic values
Retrieve gene sequences from NCBI by accession number.
Resolve names using Global Names Resolver.
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Get date data from tsn
Retrieve taxonomic rank name from given TSN.
Get possible jurisdiction values
Get description of the ITIS service
Get references related to a ITIS TSN.
Extractor functions for iucn
-class.
Vector of 793 genus names of plants
Get full ITIS record for one or more ITIS TSN's or lsid's.
Ping an API used in taxize to see if it's working.
getitistermsfromcommonname
Get itis terms from common names
Search for any match
Lookup-table for IDs of taxonomic ranks
Returns a list of the pulications used for the TSN.
Get the GBIF backbone taxon ID from taxonomic names.
Given the identifier for a data object, return all metadata about the object.
Get taxonomic names for a given taxonomic name query.
Get HTTP status codes
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Returns the usage information for the TSN.
Get possible credibility ratings
Get hierarchy down from tsn
Get The Plant List families.
Capitalize the first letter of a character string.
Search for tsn by common name
Get the UK National Biodiversity Network ID from taxonomic names.
Vector of 1,182 species names of plants
Get coverge from tsn
getitistermsfromscientificname
Get itis terms from scientific names
Retrieve immediate children taxa for a given taxon name or ID.
Retrieve the taxonomic hierarchy from given EOL taxonID.
Get NCBI taxonomy UID from GenBankID
Get common names from tsn
Parse taxon names using the GBIF name parser.
Get the NameID codes from Tropicos for taxonomic names.
Retrieve gene sequences from NCBI by accession number.
Returns the parent TSN for the entered TSN.
Get the TSN code for a search term.
Retrieve the taxonomic hierarchy for a given taxon ID.
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Get a summary from the IUCN Red List.
Search for names in the International Plant Names Index (IPNI).
Function to parse xml data, decode strings, and return NULL if logical is zero.
Get full record from TSN.
Get any match count.
Lookup details for specific names in all taxonomies in GBIF.
Get core metadata from tsn
Get data sources for the Global Names Resolver.
Query Phylomatic for a phylogenetic tree.
Get kingdom names.
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get accepted names from tsn
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Parse scientific names using EOL's name parser.
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
Resolve names using Global Names Recognition and Discovery.
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
iPlant name resolution
Search NCBI for children of a taxon
Get the UID codes from NCBI for taxonomic names.
Returns a list of the other sources used for the TSN.
Resolve names from many different sources
Retrieve the upstream taxa for a given taxon name or ID.
Get a random vector of species names.
Return all reference records for for a taxon name with a given id.
Get hierarchy up from tsn
Return all synonyms for a taxon name with a given id from NBN
Search UK National Biodiversity Network database
Lookup-table for family, genus, and species names for ThePlantList
Low level functions for working with the ITIS API.
Search for gene sequences available for taxa from NCBI.
Search Barcode of Life for taxonomic IDs
Get any matching IUCN species names
Search the CANADENSYS Vascan API.
Get common names from scientific names.
Return summary data a taxon name with a given id.
Get sources for the Phylotastic Taxonomic Name Resolution Service.
Search for taxonomic names using the Global Names Index.
Aggregate data by given taxonomic rank
Get kingdom names.
Return all accepted names for a taxon name with a given id.
Taxonomic information from around the web.
Deprecated functions in taxize
Defunct functions in taxize
Retrieve gene sequences from NCBI by taxon name and gene names.
Get comment detail from TSN
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Return all distribution records for for a taxon name with a given id.
This function will return NameBankIDs that match given search terms
Retrieve taxonomic identifiers for a given taxon name.
Check invasive species status for a set of species from GISD database
Returns a list of the synonyms (if any) for the TSN.
Get jurisdiction data, i.e., native or not native in a region.
Aggregate species data to given taxonomic rank
Get citations and licenses for data sources used in taxize
Retrieve gene sequences from NCBI by accession number.
Search UK National Biodiversity Network database for taxonomic classification
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
NCBI taxon information from uids
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Search for any matched page
Retrieve synonyms from various sources given input taxonomic names or identifiers.
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Return all synonyms for a taxon name with a given id.
Get rank for a given taxonomic name.
Function to get API key.
Replacement function for ldply that should be faster in all cases.
Search uBio for taxonomic synonyms by hierarchiesID.
Return all accepted names for a taxon name with a given id.
Return all synonyms for a taxon name with a given id.
Search uBio by namebank ID.
Return all distribution records for for a taxon name with a given id.
Search for taxonomy data from Plantminer.com
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Get taxonomic names for a given rank.
Get kingdom names from tsn
Search for presence of taxonomic names in EOL invasive species databases.
Search for taxonomic name details using the Global Names Index.
searchbycommonnameendswith
Search for tsn by common name ending with
Search Tropicos by scientific name, common name, or Tropicos ID.
Get currency from tsn
ubio_classification_search
This function will return ClassificationBankIDs (hierarchiesIDs) that refer to the
given NamebankID
Get expert information for the TSN.
Lookup-table for APGIII family names
Search Catalogue of Life for for direct children of a particular taxon.
Gets the unique LSID for the TSN, or an empty result if there is no match.
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Convert list of classifications to a tree.
Search Catalogue of Life for taxonomic classifications.
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
gettsnbyvernacularlanguage
Get tsn by vernacular language
Provides the date the ITIS database was last updated.
Provides a list of the unique languages used in the vernacular table.
Retrieve accepted TSN (with accepted name).
Search the Phylotastic Taxonomic Name Resolution Service.
Return all reference records for for a taxon name with a given id.
Get The Plant List csv files.
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Search by scientific name