MOBOT family names
Given the identifier for a data object, return all metadata about the object
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Get kingdom names.
Search Catalogue of Life for taxonomic IDs
Get the UK National Biodiversity Network ID from taxonomic names.
Parse scientific names using EOL's name parser.
gettsnbyvernacularlanguage
Get tsn by vernacular language
Get jurisdiction data, i.e., native or not native in a region.
Get full hierarchy from tsn
Search Catalogue of Life for for direct children of a particular taxon.
Return all synonyms for a taxon name with a given id from NBN
Search Barcode of Life for taxonomic IDs
Retrieve the taxonomic hierarchy from given EOL taxonID.
Get any match count.
Get the NameID codes from Tropicos for taxonomic names.
Retrieve the downstream taxa for a given taxon name or ID.
Get hierarchy up from tsn
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Replacement function for ldply that should be faster in all cases.
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Retrieve gene sequences from NCBI by accession number.
Returns a list of the synonyms (if any) for the TSN.
Search Catalogue of Life for taxonomic classifications.
Capitalize the first letter of a character string.
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Function to get API key.
Search for taxonomy data from Plantminer.com
Parse taxon names using the GBIF name parser.
Lookup details for specific names in all taxonomies in GBIF.
Get currency from tsn
Lookup in the APGIII taxonomy and replace family names
Get kingdom names from tsn
Search for presence of taxonomic names in EOL invasive species databases.
Get the TSN code for a search term.
Search for gene sequences available for taxa from NCBI.
Retrieve gene sequences from NCBI by accession number.
Get full ITIS record for one or more ITIS TSN's or lsid's.
Search NCBI for children of a taxon
Retrieve immediate children taxa for a given taxon name or ID.
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Returns a list of the pulications used for the TSN.
getjurisdictionoriginvalues
Get jurisdiction origin values
Search for any match
Get all possible kingdom names
Check invasive species status for a set of species from GISD database
Retrieve gene sequences from NCBI by accession number.
Get possible credibility ratings
Defunct functions in taxize
Get the EOL ID from Encyclopedia of Life from taxonomic names.
iPlant name resolution
Get comment detail from TSN
Search for pages in EOL database using a taxonconceptID.
Get core metadata from tsn
Return all distribution records for for a taxon name with a given id.
Search uBio for taxonomic synonyms by hierarchiesID.
Get itis terms from common names
Retrieve the taxonomic hierarchy for a given taxon ID.
Query Phylomatic for a phylogenetic tree.
getitistermsfromcommonname
Get itis terms from common names
Search for names in the International Plant Names Index (IPNI).
Search for terms in EOL database.
Get the GBIF backbone taxon ID from taxonomic names.
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Retrieve gene sequences from NCBI by taxon name and gene names.
This function will return NameBankIDs that match given search terms
Get kingdom names.
Get sources for the Phylotastic Taxonomic Name Resolution Service.
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
searchbycommonnameendswith
Search for tsn by common name ending with
Get all possible geographic values
NCBI taxon information from uids
Get The Plant List csv files.
Function to parse xml data, decode strings, and return NULL if logical is zero.
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Ping an API used in taxize to see if it's working.
Get expert information for the TSN.
Get NCBI taxonomy UID from GenBankID
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith and searchbycommonnameendswith
Returns the review year for the TSN.
Returns the parent TSN for the entered TSN.
Get the uBio id for a search term.
Get APG names
Get the Catalogue of Life ID from taxonomic names.
Get description of the ITIS service
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Gets the unique LSID for the TSN, or an empty result if there is no match.
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Return all synonyms for a taxon name with a given id.
Search for taxonomic name details using the Global Names Index.
Lookup-table for IDs of taxonomic ranks
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Resolve names using Global Names Resolver.
Extractor functions for iucn-class.
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
Resolve names using Global Names Recognition and Discovery.
Get common names from tsn
Get accepted names from tsn
Aggregate species data to given taxonomic rank
Get the BOLD (Barcode of Life) code for a search term.
Get possible jurisdiction values
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
Search the CANADENSYS Vascan API.
Retrieve accepted TSN (with accepted name).
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Return all reference records for for a taxon name with a given id.
Get citations and licenses for data sources used in taxize
Get taxonomic names for a given rank.
Get references related to a ITIS TSN.
Retrieve taxonomic rank name from given TSN.
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
Search Tropicos by scientific name, common name, or Tropicos ID.
Search UK National Biodiversity Network database
Get taxonomic names for a given taxonomic name query.
Return all accepted names for a taxon name with a given id.
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Get a random vector of species names.
Retrieve gene sequences from NCBI by accession number.
Returns a list of the other sources used for the TSN.
Search by scientific name
Get common names from scientific names.
Return all distribution records for for a taxon name with a given id.
Search the Phylotastic Taxonomic Name Resolution Service.
Get data sources for the Global Names Resolver.
Get full record from TSN.
Return summary data a taxon name with a given id.
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Provides a list of the unique languages used in the vernacular table.
Search UK National Biodiversity Network database for taxonomic classification
Get any matching IUCN species names
Search for taxonomic names using the Global Names Index.
ubio_classification_search
This function will return ClassificationBankIDs (hierarchiesIDs) that refer to the
given NamebankID
Return all reference records for for a taxon name with a given id.
Taxonomic information from around the web.
Vector of plant genus names from ThePlantList
Search for any matched page
Retrieve the upstream taxa for a given taxon name or ID.
Lookup-table for family, genus, and species names for ThePlantList
Return all synonyms for a taxon name with a given id.
Convert list of classifications to a tree.
Get coverge from tsn
Get the UID codes from NCBI for taxonomic names.
Get date data from tsn
Get hierarchy down from tsn
Returns the usage information for the TSN.
Low level functions for working with the ITIS API.
Provides the date the ITIS database was last updated.
Get HTTP status codes
Get rank for a given taxonomic name.
Get The Plant List families.
Return all accepted names for a taxon name with a given id.
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Vector of plant species (genus - specific epithet) names from ThePlantList
Resolve names from many different sources
Search for tsn by common name
Deprecated functions in taxize
MOBOT order names
Get scientific names from common names.
Retrieve taxonomic identifiers for a given taxon name.
getitistermsfromscientificname
Get itis terms from scientific names
getcredibilityratingfromtsn
Get credibility rating from tsn
Aggregate data by given taxonomic rank
Get a summary from the IUCN Red List.
Search uBio by namebank ID.