Get any match count.
Get coverge from tsn
Search for names in the International Plant Names Index (IPNI).
MOBOT family names
Get accepted names from tsn
Get a random vector of species names.
getjurisdictionoriginvalues
Get jurisdiction origin values
Retrieve gene sequences from NCBI by accession number.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Get comment detail from TSN
Given the identifier for a data object, return all metadata about the object
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
Search for taxonomic name details using the Global Names Index.
Get full record from TSN.
Get hierarchy up from tsn
Search Barcode of Life for taxonomic IDs
Get all possible geographic values
Convert list of classifications to a tree.
Lookup-table for family, genus, and species names for ThePlantList
searchbycommonnameendswith
Search for tsn by common name ending with
Get the Catalogue of Life ID from taxonomic names.
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
This function will return NameBankIDs that match given search terms
Search Catalogue of Life for taxonomic IDs
Get kingdom names from tsn
Parse taxon names using the GBIF name parser.
Get references related to a ITIS TSN.
Get the GBIF backbone taxon ID from taxonomic names.
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get currency from tsn
Return all synonyms for a taxon name with a given id.
Vector of plant species (genus - specific epithet) names from ThePlantList
MOBOT order names
Returns the usage information for the TSN.
Retrieve gene sequences from NCBI by accession number.
Search UK National Biodiversity Network database for taxonomic classification
Get the uBio id for a search term.
getitistermsfromscientificname
Get itis terms from scientific names
Search UK National Biodiversity Network database
Retrieve gene sequences from NCBI by accession number.
Get the UK National Biodiversity Network ID from taxonomic names.
Search for pages in EOL database using a taxonconceptID.
Get scientific names from common names.
Search for presence of taxonomic names in EOL invasive species databases.
Lookup details for specific names in all taxonomies in GBIF.
Retrieve taxonomic identifiers for a given taxon name.
Get itis terms from common names
Ping an API used in taxize to see if it's working.
Search for terms in EOL database.
Retrieve the downstream taxa for a given taxon name or ID.
Get rank for a given taxonomic name.
Return all distribution records for for a taxon name with a given id.
Get possible credibility ratings
Retrieve the taxonomic hierarchy from given EOL taxonID.
Retrieve taxonomic rank name from given TSN.
Get taxonomic names for a given taxonomic name query.
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Get the BOLD (Barcode of Life) code for a search term.
Get the UID codes from NCBI for taxonomic names.
Get common names from tsn
Returns the parent TSN for the entered TSN.
Get description of the ITIS service
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
Gets the unique LSID for the TSN, or an empty result if there is no match.
Aggregate species data to given taxonomic rank
Returns a list of the pulications used for the TSN.
Provides a list of the unique languages used in the vernacular table.
Replacement function for ldply that should be faster in all cases.
Resolve names using Global Names Resolver.
Returns a list of the synonyms (if any) for the TSN.
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Search Catalogue of Life for for direct children of a particular taxon.
Function to get API key.
Get hierarchy down from tsn
Get kingdom names.
Lookup in the APGIII taxonomy and replace family names
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
ubio_classification_search
This function will return ClassificationBankIDs (hierarchiesIDs) that refer to the
given NamebankID
iPlant name resolution
Vector of plant genus names from ThePlantList
Get jurisdiction data, i.e., native or not native in a region.
Get full ITIS record for one or more ITIS TSN's or lsid's.
Get common names from scientific names.
This function will return all ClassificationBank data pertaining to a
particular ClassificationBankID
Retrieve the upstream taxa for a given taxon name or ID.
Capitalize the first letter of a character string.
Lookup-table for IDs of taxonomic ranks
Search the CANADENSYS Vascan API.
Check invasive species status for a set of species from GISD database
Defunct functions in taxize
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith
and searchbycommonnameendswith
Get APG names
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Resolve names using Global Names Recognition and Discovery.
Retrieve immediate children taxa for a given taxon name or ID.
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
Get The Plant List families.
Parse scientific names using EOL's name parser.
Retrieve gene sequences from NCBI by accession number.
Get the NameID codes from Tropicos for taxonomic names.
Get any matching IUCN species names
Deprecated functions in taxize
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
Get kingdom names.
getitistermsfromcommonname
Get itis terms from common names
Extractor functions for iucn
-class.
Retrieve the taxonomic hierarchy for a given taxon ID.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Provides the date the ITIS database was last updated.
Search by scientific name
Search for taxonomic names using the Global Names Index.
Returns a list of the other sources used for the TSN.
Search NCBI for children of a taxon
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Get HTTP status codes
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Retrieve accepted TSN (with accepted name).
Get hierarchies from TSN values, full, upstream only, or immediate downstream
only
Search for any matched page
Search Tropicos by scientific name, common name, or Tropicos ID.
Search for gene sequences available for taxa from NCBI.
Get a summary from the IUCN Red List
Get the TSN code for a search term.
Get core metadata from tsn
Return all synonyms for a taxon name with a given id from NBN
Returns the review year for the TSN.
Get citations and licenses for data sources used in taxize
Search uBio for taxonomic synonyms by hierarchiesID.
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Return all synonyms for a taxon name with a given id.
Aggregate data by given taxonomic rank
Get all possible kingdom names
Taxnomic search and phylogeny retrieval.
Resolve names from different data sources
Get expert information for the TSN.
Search uBio by namebank ID.
Return all reference records for for a taxon name with a given id.
Search for any match
Return summary data a taxon name with a given id.
Phylotastic Taxonomic Name Resolution Service.
Search for taxonomy data from Plantminer.com
Query Phylomatic for a phylogenetic tree.
Get The Plant List csv files.
Retrieve gene sequences from NCBI by taxon name and gene names.
Return all accepted names for a taxon name with a given id.
Get data sources for the Global Names Resolver.
Get NCBI taxonomy UID from GenBankID
Search Catalogue of Life for taxonomic classifications.
getcredibilityratingfromtsn
Get credibility rating from tsn
Get possible jurisdiction values
Low level functions for working with the ITIS API.
NCBI taxon information from uids
Search for tsn by common name
Return all distribution records for for a taxon name with a given id.
TNRS sources
Return all accepted names for a taxon name with a given id.
Return all reference records for for a taxon name with a given id.
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Get date data from tsn
Get full hierarchy from tsn
gettsnbyvernacularlanguage
Get tsn by vernacular language
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Get taxonomic names for a given rank.