Search Catalogue of Life for taxonomic IDs
Search Barcode of Life for taxonomic IDs
Returns the full ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Provides a list of the unique languages used in the vernacular table.
Parse taxon names using the GBIF name parser.
Get full record from TSN.
Retrieve gene sequences from NCBI by accession number.
MOBOT order names
Lookup details for specific names in all taxonomies in GBIF.
Retrieve the downstream taxa for a given taxon name or ID.
Returns a list of the synonyms (if any) for the TSN.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Get scientific names from common names.
Get accepted names from tsn
Search Catalogue of Life for taxonomic classifications.
Get itis terms from common names
Get an ID for a IUCN listed taxon
Search for pages in EOL database using a taxonconceptID.
MOBOT family names
Get NCBI taxonomy UID from GenBankID
Retrieve gene sequences from NCBI by accession number.
Retrieve gene sequences from NCBI by taxon name and gene names.
Retrieve synonyms from various sources given input taxonomic names or identifiers.
Get comment detail from TSN
Search for terms in EOL database.
Retrieve gene sequences from NCBI by accession number.
Get a summary from the IUCN Red List
Get full hierarchy from tsn
getunacceptabilityreasonfromtsn
Returns the unacceptability reason, if any, for the TSN.
getitistermsfromcommonname
Get itis terms from common names
Retrieve the upstream taxa for a given taxon name or ID.
Get the Catalogue of Life ID from taxonomic names.
Search Catalogue of Life for for direct children of a particular taxon.
Retrieve taxonomic rank name from given TSN.
Get kingdom names
Gets the partial ITIS record for the TSN in the LSID, found by comparing the
TSN in the search key to the TSN field. Returns an empty result set if
there is no match or the TSN is invalid.
Get the BOLD (Barcode of Life) code for a search term.
Low level functions for working with the ITIS API.
Search UK National Biodiversity Network database
getcredibilityratingfromtsn
Get credibility rating from tsn
Return all synonyms for a taxon name with a given id from NBN
Get kingdom names
Get any match count.
Get date data from tsn
Returns the scientific name for the TSN. Also returns the component parts
(names and indicators) of the scientific name.
Get possible jurisdiction values
Returns a list of the other sources used for the TSN.
Get description of the ITIS service
Return all accepted names for a taxon name with a given id.
searchbycommonnameendswith
Search for tsn by common name ending with
Retrieve immediate children taxa for a given taxon name or ID.
Get the UK National Biodiversity Network ID from taxonomic names.
Provides a list of all the unique rank names contained in the database and
their kingdom and rank ID values.
Use Catalogue of Life to get downstream taxa to a given taxonomic level.
Convert list of classifications to a tree.
getjurisdictionaloriginfromtsn
Get jurisdictional origin from tsn
Lookup-table for family, genus, and species names for ThePlantList
Parse scientific names using EOL's name parser.
getgeographicdivisionsfromtsn
Get geographic divisions from tsn
Get core metadata from tsn
Resolve names using Global Names Recognition and Discovery.
Retrieve accepted TSN (with accepted name).
Get citations and licenses for data sources used in taxize
Return summary data a taxon name with a given id.
Get full ITIS record for one or more ITIS TSN's or lsid's.
Ping an API used in taxize to see if it's working.
Returns a list of the pulications used for the TSN.
Get APG names
Get The Plant List csv files.
getglobalspeciescompletenessfromtsn
Get global species completeness from tsn
Return all reference records for for a taxon name with a given id.
Get hierarchy down from tsn
Get common names from tsn
Search Tropicos by scientific name, common name, or Tropicos ID.
Retrieve the taxonomic hierarchy from given EOL taxonID.
Lookup in the APGIII taxonomy and replace family names
Get kingdom names from tsn
Searches common name and acts as thin wrapper around searchbycommonnamebeginswith and searchbycommonnameendswith
Search UK National Biodiversity Network database for taxonomic classification
Deprecated functions in taxize
Get the UID codes from NCBI for taxonomic names.
Get the NameID codes from Tropicos for taxonomic names.
Function to get API key.
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN.
Get possible credibility ratings
Lookup-table for IDs of taxonomic ranks
Get ITIS terms, i.e., tsn's, authors, common names, and scientific names.
Given the identifier for a data object, return all metadata about the object
Get the TSN code for a search term.
Return all accepted names for a taxon name with a given id.
Return all synonyms for a taxon name with a given id.
TNRS sources
Search NCBI for children of a taxon
Search for names in the International Plant Names Index (IPNI).
Get currency from tsn
Gets the TSN corresponding to the LSID, or an empty result if there is no match.
Get expert information for the TSN.
Get the uBio id for a search term
Returns the review year for the TSN.
Search for taxonomy data from Plantminer.com
uBio classification
Get references related to a ITIS TSN.
gettaxonauthorshipfromtsn
Returns the author information for the TSN.
gettaxonomicranknamefromtsn
Returns the kingdom and rank information for the TSN.
This function will return NameBankIDs that match given search terms
Get jurisdiction data, i.e., native or not native in a region.
ITIS hierarchy
Retrieve taxonomic identifiers for a given taxon name.
Check invasive species status for a set of species from GISD database
Get all possible kingdom names
Get common names from scientific names.
Search for tsn by common name
Return all reference records for for a taxon name with a given id.
Capitalize the first letter of a character string.
searchbycommonnamebeginswith
Search for tsn by common name beginning with
Search for taxonomic name details using the Global Names Index.
Get a random vector of species names.
Search for gene sequences available for taxa from NCBI.
gettsnbyvernacularlanguage
Get tsn by vernacular language
Get The Plant List families.
Search the CANADENSYS Vascan API.
Return all synonyms for a taxon name with a given id.
Returns the parent TSN for the entered TSN.
Search for any match
Get any matching IUCN species names
Get family names to make Phylomatic input object, and output input string
to Phylomatic for use in the function phylomatic_tree.
A light wrapper around the taxonstand fxn to call Theplantlist.org database.
Get rank for a given taxonomic name.
Vector of plant species (genus - specific epithet) names from ThePlantList
Search by scientific name
Vector of plant genus names from ThePlantList
getitistermsfromscientificname
Get itis terms from scientific names
Aggregate species data to given taxonomic rank
uBio ping
Defunct functions in taxize
Retrieve the taxonomic hierarchy for a given taxon ID.
Return all distribution records for for a taxon name with a given id.
Get HTTP status codes
Aggregate data by given taxonomic rank
NCBI taxon information from uids
Get the GBIF backbone taxon ID from taxonomic names.
Retrieve gene sequences from NCBI by accession number.
Search uBio for taxonomic synonyms by hierarchiesID.
Query Phylomatic for a phylogenetic tree.
Search uBio by namebank ID.
Returns the usage information for the TSN.
Resolve names using Global Names Resolver.
Return all distribution records for for a taxon name with a given id.
Search for any matched page
Phylotastic Taxonomic Name Resolution Service.
ubio_classification_search
This function will return ClassificationBankIDs (hierarchiesIDs) that refer to the
given NamebankID
Get coverge from tsn
Get taxonomic names for a given rank.
getjurisdictionoriginvalues
Get jurisdiction origin values
Search for presence of taxonomic names in EOL invasive species databases.
Gets the unique LSID for the TSN, or an empty result if there is no match.
Get hierarchy up from tsn
iPlant name resolution
Search for taxonomic names using the Global Names Index.
Get all possible geographic values
Provides the date the ITIS database was last updated.
Get data sources for the Global Names Resolver.
Get taxonomic names for a given taxonomic name query.
Extractor functions for iucn-class.
Resolve names from different data sources
Replacement function for ldply that should be faster in all cases.
Taxnomic search and phylogeny retrieval.