col_classification
: Seeclassification
eol_hierarchy
: Seeclassification
tp_classification
: Seeclassification
tpl_search
: Use theTPL
orTPLck
directly.get_seqs
: This function changed name toncbi_getbyname
.get_genes
: This function changed name toncbi_getbyid
.get_genes_avail
: This function changed name toncbi_search
.ncbi_getbyname
: Seencbi_byname
in thencbi_getbyid
: Seencbi_byid
in thencbi_search
: Seencbi_searcher
in theeol_invasive
: Seeeol
in thegisd_isinvasive
: Seegisd
in theubio_classification
: The uBio web services are apparently down
indefinitely.ubio_classification_search
: The uBio web services are apparently
down indefinitely.ubio_id
: The uBio web services are apparently down indefinitely.ubio_ping
: The uBio web services are apparently down indefinitely.ubio_search
: The uBio web services are apparently down indefinitely.ubio_synonyms
: The uBio web services are apparently down indefinitely.get_ubioid
: The uBio web services are apparently down indefinitely.phylomatic_tree
: This function is defunct. Seephylomatic
in the packagephylomatic_format
: This function is defunct. Seephylomatic_names
in the package