col_classification: Seeclassificationeol_hierarchy: Seeclassificationtp_classification: Seeclassificationtpl_search: Use theTPLorTPLckdirectly.get_seqs: This function changed name toncbi_getbyname.get_genes: This function changed name toncbi_getbyid.get_genes_avail: This function changed name toncbi_search.ncbi_getbyname: Seencbi_bynamein thencbi_getbyid: Seencbi_byidin thencbi_search: Seencbi_searcherin theeol_invasive: Seeeolin thegisd_isinvasive: Seegisdin theubio_classification: The uBio web services are apparently down
indefinitely.ubio_classification_search: The uBio web services are apparently
down indefinitely.ubio_id: The uBio web services are apparently down indefinitely.ubio_ping: The uBio web services are apparently down indefinitely.ubio_search: The uBio web services are apparently down indefinitely.ubio_synonyms: The uBio web services are apparently down indefinitely.get_ubioid: The uBio web services are apparently down indefinitely.phylomatic_tree: This function is defunct. Seephylomaticin the packagephylomatic_format: This function is defunct. Seephylomatic_namesin the package