taxize (version 0.7.9)

genbank2uid: Get NCBI taxonomy UID from GenBankID

Description

Get NCBI taxonomy UID from GenBankID

Usage

genbank2uid(id, batch_size = 100, ...)

Arguments

id

A GenBank accession alphanumeric string, or a gi numeric string.

batch_size

The number of queries to submit at a time.

...

Curl args passed on to GET

Details

See http://www.ncbi.nlm.nih.gov/Sitemap/sequenceIDs.html for help on why there are two identifiers, and the difference between them.

Examples

## Not run: 
# # with accession numbers
# genbank2uid(id = 'AJ748748')
# genbank2uid(id = 'Y13155')
# genbank2uid(id = 'X78312')
# genbank2uid(id = 'KM495596')
# 
# # with gi numbers
# genbank2uid(id = 62689767)
# genbank2uid(id = 22775511)
# genbank2uid(id = 156446673)
# 
# # pass in many accession or gi numbers
# genbank2uid(c(62689767,156446673))
# genbank2uid(c('X78312','KM495596'))
# genbank2uid(list('X78312',156446673))
# 
# # curl options
# library('httr')
# genbank2uid(id = 156446673, config=verbose())
# ## End(Not run)