taxize-defunct: Defunct functions in taxize
Description
The following functions are now defunct (no longer available):
Details
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col_classification: See classification
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eol_hierarchy: See classification
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tp_classification: See classification
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tpl_search: Use the Taxonstand functions
TPL or TPLck directly.
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get_seqs: This function changed name to ncbi_getbyname.
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get_genes: This function changed name to ncbi_getbyid.
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get_genes_avail: This function changed name to ncbi_search.
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ncbi_getbyname: See ncbi_byname in the traits package.
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ncbi_getbyid: See ncbi_byid in the traits package.
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ncbi_search: See ncbi_searcher in the traits package.
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eol_invasive: See eol in the originr package.
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gisd_isinvasive: See gisd in the originr package.
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ubio_classification: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
-
ubio_classification_search: The uBio web services was down for quite
a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up
and available.
-
ubio_id: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
-
ubio_ping: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
-
ubio_search: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
-
ubio_synonyms: The uBio web services was down for quite a while, is
now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
-
get_ubioid: The uBio web services are apparently down indefinitely.
-
phylomatic_tree: This function is defunct. See
phylomatic in the package brranching
-
phylomatic_format: This function is defunct. See
phylomatic_names in the package brranching