taxize (version 0.9.91)

taxize-defunct: Defunct functions in taxize

Description

The following functions are now defunct (no longer available):

  • tpl_search(): Use the Taxonstand functions TPL or TPLck directly.

  • get_seqs(): This function changed name toncbi_getbyname()()].

  • get_genes(): This function changed name toncbi_getbyid()()].

  • get_genes_avail(): This function changed name toncbi_search()()].

  • ncbi_getbyname(): See ncbi_byname in the traits package.

  • ncbi_getbyid(): See ncbi_byid in the traits package.

  • ncbi_search(): See ncbi_searcher in the traits package.

  • eol_invasive(): See eol in the originr package.

  • gisd_isinvasive(): See gisd in the originr package.

  • ubio_classification(): The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

  • ubio_classification_search(): The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

  • ubio_id(): The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

  • ubio_ping(): The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

  • ubio_search(): The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

  • ubio_synonyms(): The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

  • get_ubioid(): The uBio web services are apparently down indefinitely.

  • phylomatic_tree(): This function is defunct. See phylomatic in the package brranching

  • phylomatic_format(): This function is defunct. See phylomatic_names in the package brranching

  • iucn_summary_id(): This function is defunct. Use iucn_summary()

  • eubon(): This function is defunct. Use eubon_search()

Arguments