taxizedb (version 0.3.2)

db_download: Download taxonomic databases

Description

Download taxonomic databases

Usage

db_download_ncbi(verbose = TRUE, overwrite = FALSE)
db_download_itis(verbose = TRUE, overwrite = FALSE)
db_download_tpl(verbose = TRUE, overwrite = FALSE)
db_download_wfo(verbose = TRUE, overwrite = FALSE)
db_download_col(verbose = TRUE, overwrite = FALSE)
db_download_gbif(verbose = TRUE, overwrite = FALSE)
db_download_wikidata(verbose = TRUE, overwrite = FALSE)

Value

(character) path to the downloaded SQL database

Arguments

verbose

(logical) Print messages. Default: TRUE

overwrite

(logical) If TRUE force an update by overwriting previously downloaded data. Default: FALSE

Details

Downloads sql database, cleans up unneeded files, returns path to sql file

See Also

tdb_cache

Examples

if (FALSE) {
# ITIS
db_download_itis()
src_itis()

# Plantlist
db_download_tpl()
src_tpl()

# COL
db_download_col()
src_col()

# GBIF
db_download_gbif()
src_gbif()

# NCBI
db_download_ncbi()
src_ncbi()

# Wikidata
db_download_wikidata()
db_download_wikidata(overwrite=TRUE) # overwrite - download again
src_wikidata()

# World Flora Online
db_download_wfo()
src_wfo()
}