taxizedb (version 0.3.2)

taxid2rank: Convert taxon IDs to scientific ranks

Description

Convert taxon IDs to scientific ranks

Usage

taxid2rank(x, db = "ncbi", verbose = TRUE, warn = TRUE, ...)

Value

character vector of ranks in the same order as the inputs

Arguments

x

(character) Vector of taxon keys (name or id) for the given database

db

(character) The database to search, one of ncbi, itis, gbif, col, or wfo

verbose

(logical) Print verbose messages

warn

(logical) If TRUE, raise a warning if any taxon IDs can not be found

...

Additional arguments passed to database specific classification functions

Examples

if (FALSE) {
taxid2rank(c(3701, 9606))
taxid2rank(c(154395, 154357, 23041, 154396), db = "itis")
taxid2rank(c('wfo-4000032377', 'wfo-0000541830'), db = "wfo")
taxid2rank("wfo-7000000057", db = "wfo")
taxid2rank(2877951, db = "gbif")
taxid2rank(c(2877951, 5386), db = "gbif")
taxid2rank(c("C66T4", "C7ZVH", "TP"), db = "col")
}