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taxlist (version 0.1.7)

Handling Taxonomic Lists

Description

Handling taxonomic lists through objects of class 'taxlist'. This package provides functions to import species lists from 'Turboveg' () and the possibility to create backups from resulting R-objects. Also quick displays are implemented as summary-methods.

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Install

install.packages('taxlist')

Monthly Downloads

260

Version

0.1.7

License

GPL (>= 2)

Issues

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Maintainer

Miguel Alvarez

Last Published

January 10th, 2020

Functions in taxlist (0.1.7)

count_taxa

Count taxa within a taxlist object
summary

Print Overviews for taxlist Objects and their Content
taxon_traits

Manipulation of taxon traits in taxlist objects.
taxon_views

Management of concept views in taxonomic lists.
tax2traits

Set Taxonomic Information as Taxon Traits
subset

Subset Method for taxlist Objects
levels

Set and Retrieves Hierarchical Levels
replace_x

Data Manipulation
taxlist-package

Handling Taxonomic Lists
match_names

Search Matchings between Character and taxlist Objects
taxlist-class

Class taxlist
merge_taxa

Merge Concepts
get_children,get_parents

Retrieve Children or Parents of Taxon Concepts
dissect_name

Dissect Scientific Names into their Elements
print_name

Format Usage Names for Publications
tnrs

Phylotastic Taxonomic Name Resolution Service.
tv2taxlist

Import species lists from Turboveg databases.
taxon_relations

Retrieve or replace slot taxonRelations in taxlist objects
taxon_names

Handle Information on Taxon Usage Names
deprecated-functions

Deprecated Functions
backup_object

Make and load Backups of R Objects
Easplist-data

List of Vascular Plants from East Africa
clean_strings

Cleaning Character Strings
df2taxlist

Convert Data Frames into taxlist Objects
Extract

Extract or Replace Parts of taxlist Objects
clean

Clean Orphaned Records
accepted_name

Manage Accepted Names, Synonyms and Basionyms
as.list

Coerce an S4 Object to a List