taxlist v0.1.7
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Handling Taxonomic Lists
Handling taxonomic lists through objects of class 'taxlist'.
This package provides functions to import species lists from 'Turboveg'
(<https://www.synbiosys.alterra.nl/turboveg>) and the possibility to create
backups from resulting R-objects.
Also quick displays are implemented as summary-methods.
Functions in taxlist
| Name | Description | |
| count_taxa | Count taxa within a taxlist object | |
| summary | Print Overviews for taxlist Objects and their Content | |
| taxon_traits | Manipulation of taxon traits in taxlist objects. | |
| taxon_views | Management of concept views in taxonomic lists. | |
| tax2traits | Set Taxonomic Information as Taxon Traits | |
| subset | Subset Method for taxlist Objects | |
| levels | Set and Retrieves Hierarchical Levels | |
| replace_x | Data Manipulation | |
| taxlist-package | Handling Taxonomic Lists | |
| match_names | Search Matchings between Character and taxlist Objects | |
| taxlist-class | Class taxlist | |
| merge_taxa | Merge Concepts | |
| get_children,get_parents | Retrieve Children or Parents of Taxon Concepts | |
| dissect_name | Dissect Scientific Names into their Elements | |
| print_name | Format Usage Names for Publications | |
| tnrs | Phylotastic Taxonomic Name Resolution Service. | |
| tv2taxlist | Import species lists from Turboveg databases. | |
| taxon_relations | Retrieve or replace slot taxonRelations in taxlist objects | |
| taxon_names | Handle Information on Taxon Usage Names | |
| deprecated-functions | Deprecated Functions | |
| backup_object | Make and load Backups of R Objects | |
| Easplist-data | List of Vascular Plants from East Africa | |
| clean_strings | Cleaning Character Strings | |
| df2taxlist | Convert Data Frames into taxlist Objects | |
| Extract | Extract or Replace Parts of taxlist Objects | |
| clean | Clean Orphaned Records | |
| accepted_name | Manage Accepted Names, Synonyms and Basionyms | |
| as.list | Coerce an S4 Object to a List | |
| No Results! | ||
Vignettes of taxlist
| Name | ||
| DataScheme.pdf | ||
| Siegesbeckia_orientalis.png | ||
| taxlist-intro.Rmd | ||
| wetlands_syntax.png | ||
| No Results! | ||
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Details
| Encoding | UTF-8 |
| LazyData | true |
| License | GPL (>= 2) |
| URL | https://cran.r-project.org/package=taxlist, https://github.com/kamapu/taxlist |
| BugReports | https://github.com/kamapu/taxlist/issues |
| Collate | 'NULLing.R''auxiliary_functions.R''deprecated-functions.R' 'replace_x.R''dissect_name.R''clean_strings.R' 'taxlist-class.R''clean.R''as.list.R''taxon_views.R''add_view.R' 'count_taxa.R''taxon_names.R''taxon_relations.R''taxon_traits.R' 'levels.R''add_concept.R''update_concept.R''add_synonym.R' 'accepted_name.R''synonyms.R''basionym.R''update_name.R''delete_name.R' 'get_children.R' 'change_concept.R''Extract.R''subset.R' 'merge_taxa.R''backup_object.R''load_last.R''summary.R' 'df2taxlist.R''tv2taxlist.R''tnrs.R''tax2traits.R''match_names.R''print_name.R' 'StartMessage.R' |
| VignetteBuilder | knitr |
| NeedsCompilation | no |
| Packaged | 2020-01-10 09:20:13 UTC; ma |
| Repository | CRAN |
| Date/Publication | 2020-01-10 16:30:02 UTC |
| suggests | covr , devtools , goodpractice , knitr , rmarkdown , stringi , testthat |
| imports | foreign , methods , stats , stringdist , taxa , taxize , utils , vegdata |
| depends | R (>= 3.5.0) |
| Contributors | Zachary Foster |
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