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taxotools

Tools include matching and merging taxonomic lists, casting and melting scientific names, managing taxonomic lists from GBIF and ITIS, harvesting names from wikipedia and fuzzy matching.

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Version

Install

install.packages('taxotools')

Monthly Downloads

496

Version

0.0.132

License

CC0

Maintainer

Vijay Barve

Last Published

January 23rd, 2023

Functions in taxotools (0.0.132)

list_itis_syn

Get ITIS Synonyms for list of names
list_higher_taxo

Get higher taxonomy data for list of names
melt_scientificname

Melt scientific name into fields
merge_lists

merge two lists of names
match_lists

match two taxonomic lists
list_wiki_syn

Get Wikipedia Synonyms for list of names
taxotools

taxotools: Taxonomic List processing
get_synonyms

get synonyms
taxo_fuzzy_match

taxo_fuzzy_match
guess_taxo_rank

Guess the taxonomic rank of Scientific Name
syn2taxo

Synonym list to taxolist
resolve_names

Resolve canonical names against GNA
taxo2doc

Taxolist to document
wiki2taxo

Wikipedia list to taxo
taxo2syn

Taxolist to Synonym list
synonymize_subspecies

Convert all subspecies into synonyms of the species
melt_cs_field

Generate a list melting character (comma) separated field values into multiple records
melt_canonical

Deconstruct canonical names
taxo2DwC

Taxolist to Darwin Core (DwC)
get_accepted_names

get_accepted_names
expand_name

Expands Scientific name
compact_ids

compact id numbers
get_itis_syn

Get Integrated Taxonomic Information System 'ITIS' Synonyms for a Scientific Name
cast_canonical

Construct canonical names
cast_cs_field

Build a character (comma) separated List within field
build_gen_syn

Build genus level synonyms
DwC2taxo

Darwin Core to Taxolist format
check_scientific

Parse and resolve a scientific name string
cast_scientificname

Cast scientific name using taxonomic fields