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taxotools

Tools include matching and merging taxonomic lists, casting and melting scientific names, managing taxonomic lists from GBIF and ITIS, harvesting names from wikipedia and fuzzy matching.

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Install

install.packages('taxotools')

Monthly Downloads

126

Version

0.0.79

License

CC0

Maintainer

Vijay Barve

Last Published

January 18th, 2021

Functions in taxotools (0.0.79)

get_itis_syn

Get ITIS Synonyms for a Scientific Name

cast_canonical

Construct canonical names

guess_taxo_rank

Guess the taxonomic rank of Scientific Name

expand_name

Expands Scientific name

build_gen_syn

Build genetic level synonyms

check_scientific

Parse and resolve a scientific name string

cast_cs_field

Build a character (comma) separated List within field

DwC2taxo

Darwin Core to Taxolist format

get_accepted_names

list_higher_taxo

Get higher taxonomy data for list of names

melt_cs_field

Generate a list melting character (comma) separated field values into multiple records

melt_canonical

Deconstruct canonical names

match_lists

match two taxonomic lists

list_wiki_syn

Get Wikipedia Synonyms for list of names

list_itis_syn

Get ITIS Synonyms for list of names

taxo_fuzzy_match

synonymize_subspecies

Convert all subspecies into synonyms of the species

taxotools

taxotools: Tools to handle taxonomic data

syn2taxo

Synonym list to taxolist

merge_lists

merge two lists of names

wiki2taxo

Wikipedia list to taxo

melt_scientificname

Melt scientific name into fields