convergence.index: Compute convergence characteristics of repertoires.
Description
Get a number of rows with similar aminoacid sequence but different nucleotide sequence.Usage
convergence.index(.alpha, .beta, .col.nuc = "CDR3.nucleotide.sequence",
.col.aa = "CDR3.amino.acid.sequence")
Arguments
.alpha
Either data frame with columns .col.nuc
and .col.aa
or list with such data frames.
.beta
Either data frame or none.
.col.nuc
Name of the column with nucleotide sequences.
.col.aa
Name of the columnw ith aminoacid sequences.
Value
- If
.alpha
is data frame, than integer vector of length 2 with . If .alpha
is a list
than matrix M with M[i,j] = convergence.index(.alpha[[i]], .alpha[[j]]).