mitcr.stats: MiTCR data frame basic statistics.
Description
Compute basic statistics of TCR repertoires: number of clones, number of clonotypes,
number of in-frame and out-of-frame sequences, summary of "Read.count" and other.Usage
mitcr.stats(.data, .head = 0, .col = 'Read.count')lib.mitcr.stats(.data, .head = 0, .umi = NA)
Arguments
.data
MiTCr data frames or a list with MiTCR data frames.
.head
How many top clones use to comput summary.
.col
Which columns to use to compute statistics.
.umi
If T than use both "Barcode.count" and "Read.count" columns. If NA than check if
"Barcode.count" in columns' names.
Value
- if
.data
is a data frame, than numeric vector with statistics. If .data
is
a list with data frames, than matrix with statistics for each data frame.
Examples
Run this code# Compute basic statistics of list with data frames.
mitcr.stats(immdata)
lib.mitcr.stats(immdata)
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