top.cross
- get top crosses of the given type between each pair of the given data.frames with top.cross
function.top.cross.vec
- get vector of cross values for each top with the top.cross.vec
function.
top.cross.plot
- plot a plots with result with the top.cross.plot
function.
top.cross(.data, .n = NA, .data2 = NULL, .type = 'ave', .norm = F, .verbose = T)top.cross.vec(.top.cross.res, .i, .j)
top.cross.plot(.top.cross.res, .xlab = 'Top clones',
.ylab = 'Normalised number of shared clones',
.nrow = 2, .legend.ncol = 1, .logx = T, .logy = T)
tcR::intersect
function.tcR::intersect
function.top.cross
function.top.cross
- return list for each element in .n
with intersection matrix (from tcR::intersect
).top.cross.vec
- vector of length .n
with .i
:.j
elements of each matrix.
top.cross.plot
- grid / ggplot object.
.n
can have two possible values. It could be either integer vector of numbers (same as in the top.fun
function) or
NA and then it will be replaced internally by the value .n <- seq(5000, min(sapply(.data, nrow)), 5000)
.intersect
immdata.top <- top.cross(immdata)
top.cross.plot(immdata.top)
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