tcR (version 1.1)

vis.clonal.dynamics: Visualise clonal dynamics among time points.

Description

Visualise clonal dynamics (i.e., changes in frequency or count) with error bars of given clones among time points.

Usage

vis.clonal.dynamics(.changed, .lower, .upper, .log = T)

Arguments

.changed
Result from the find.clonotypes function, i.e. data frame with first columns with sequences (nucleotide or amino acid) and other columns are columns with frequency / count for each time point for each clone.
.lower
Similar to .changed but values are lower bound for clonal count / frequency.
.upper
Similar to .changed but values are upper bound for clonal count / frequency.
.log
If T than log-scale y-axis.

Value

  • ggplot object.