tcR (version 1.3)

mutated.neighbours: Get vertex neighbours.

Description

Get all properties of neighbour vertices in a mutation network of specific vertices.

Usage

mutated.neighbours(.G, .V, .order = 1)

Arguments

.G

Mutation network.

.V

Indices of vertices for which return neighbours.

.order

Neighbours of which order return.

Value

• List of length .V with data frames with vertex properties. First row in each data frame is the vertex for which neighbours was returned.

Examples

data(twb)
twb.shared <- shared.repertoire(twb)
G <- mutation.network(twb.shared)
head(mutated.neighbours(G, 1)[[1]])
#           label             vseg repind prob people npeople
# 1 CASSDRDTGELFF          TRBV6-4      1   -1   1111       4
# 2 CASSDSDTGELFF          TRBV6-4     69   -1   1100       2
# 3 CASSYRDTGELFF TRBV6-3, TRBV6-2    315   -1   1001       2
# 4 CASKDRDTGELFF TRBV6-3, TRBV6-2   2584   -1   0100       1
# 5 CASSDGDTGELFF          TRBV6-4   5653   -1   0010       1
# 6 CASSDRETGELFF          TRBV6-4   5950   -1   0100       1