HUMAN_TRAJ

HUMAN_TRAV

HUMAN_TRBD

HUMAN_TRBJ

HUMAN_TRBV

HUMAN_TRBV_MITCR

HUMAN_TRDD

HUMAN_TRDJ

HUMAN_TRDV

HUMAN_TRGJ

HUMAN_TRGV

genealphabets

segments.alphabets

Character vector with names for segments. With <code>tcR</code> we provided alphabets for all alpha, beta,
gamma and delta chains gene segments.

datasets

Platform for the advanced analysis of T cell receptor repertoires data and visualisation of the analysis results.

Vadim Nazarov

Advanced Data Analysis of T Cell Receptor Repertoires

segments.alphabets function

Each <code><species>_<genes></genes></species></code> is a character vector. <species> is an identifier of species, <genes> is concatenated three
identifiers of cell type ("TR**" for TCR, "IG**" for Ig), chain (e.g., "**A*" for alpha chains) and gene segment ("***V" for V(ariable) gene segment,
"***J" for J(oining) gene segment, "***D" for D(iversity) gene segment).</genes></species>

format

Alphabets of TCR and Ig gene segments.

segments.alphabets: Alphabets of TCR and Ig gene segments.

Description

Usage

Arguments

format

Examples