You can see a more detailed description for each overlap method at intersectClonesets and similarity.

Parameter `.method`

can have one of the following value each corresponding to the specific method:

- "exact" for the shared number of clonotypes (basic function `intersectClonesets(..., .type = "..e")`

).

- "hamm" for the number of similar clonotypes by the Hamming distance (basic function `intersectClonesets(..., .type = "..h")`

).

- "lev" for the number of similar clonotypes by the Levenshtein distance (basic function `intersectClonesets(..., .type = "..l")`

).

- "jaccard" for the Jaccard index (basic function `jaccard.index`

).

- "morisita" for the Morisita's overlap index (basic function `morisita.index`

).

- "tversky" for the Tversky index (basic function `tversky.index`

).

- "overlap" for the overlap coefficient (basic function `overlap.coef`

).

- "horn" for the Horn's index (basic function `horn.index`

).