teal.modules.clinical (version 0.10.0)

template_events_summary: Template: Adverse Events Summary

Description

Creates a valid expression to generate an adverse events summary table.

Usage

template_events_summary(
  anl_name,
  parentname,
  arm_var,
  dthfl_var = "DTHFL",
  dcsreas_var = "DCSREAS",
  flag_var_anl = NULL,
  flag_var_aesi = NULL,
  aeseq_var = "AESEQ",
  llt = "AEDECOD",
  add_total = TRUE,
  total_label = default_total_label(),
  na_level = default_na_str(),
  count_dth = TRUE,
  count_wd = TRUE,
  count_subj = TRUE,
  count_pt = TRUE,
  count_events = TRUE
)

Value

a list of expressions to generate a table or plot object.

Arguments

anl_name

(character)
analysis data used in teal module.

parentname

(character)
parent analysis data used in teal module, usually this refers to ADSL.

arm_var

(character)
variable names that can be used as arm_var.

dthfl_var

(character)
name of variable for subject death flag from parentname. Records with "Y" are summarized in the table row for "Total number of deaths".

dcsreas_var

(character)
name of variable for study discontinuation reason from parentname. Records with "ADVERSE EVENTS" are summarized in the table row for "Total number of patients withdrawn from study due to an AE".

flag_var_anl

(character)
name of flag variable from dataset used to count adverse event sub-groups (e.g. Serious events, Related events, etc.). Variable labels are used as table row names if they exist.

flag_var_aesi

(character)
name of flag variable from dataset used to count adverse event special interest groups. All flag variables must be of type logical. Variable labels are used as table row names if they exist.

aeseq_var

(character)
name of variable for adverse events sequence number from dataset. Used for counting total number of events.

llt

(character)
name of the variable with low level term for events.

add_total

(logical)
whether to include column with total number of patients.

total_label

(string)
string to display as total column/row label if column/row is enabled (see add_total). Defaults to "All Patients". To set a new default total_label to apply in all modules, run set_default_total_label("new_default").

na_level

(string)
used to replace all NA or empty values in character or factor variables in the data. Defaults to "<Missing>". To set a default na_level to apply in all modules, run set_default_na_str("new_default").

count_dth

(logical)
whether to show count of total deaths (based on dthfl_var). Defaults to TRUE.

count_wd

(logical)
whether to show count of patients withdrawn from study due to an adverse event (based on dcsreas_var). Defaults to TRUE.

count_subj

(logical)
whether to show count of unique subjects (based on USUBJID). Only applies if event flag variables are provided.

count_pt

(logical)
whether to show count of unique preferred terms (based on llt). Only applies if event flag variables are provided.

count_events

(logical)
whether to show count of events (based on aeseq_var). Only applies if event flag variables are provided.

See Also

tm_t_events_summary()