Creates a valid expression to generate analysis tables and plots for Mixed Model Repeated Measurements.
template_fit_mmrm(
parentname,
dataname,
aval_var,
arm_var,
ref_arm,
comp_arm = NULL,
combine_comp_arms = FALSE,
id_var,
visit_var,
cov_var,
conf_level = 0.95,
method = "Satterthwaite",
cor_struct = "unstructured",
weights_emmeans = "proportional",
parallel = FALSE
)template_mmrm_tables(
parentname,
dataname,
fit_name,
arm_var,
ref_arm,
visit_var,
paramcd,
show_relative = c("increase", "reduction", "none"),
table_type = "t_mmrm_cov",
total_label = default_total_label(),
basic_table_args = teal.widgets::basic_table_args()
)
template_mmrm_plots(
fit_name,
lsmeans_plot = list(select = c("estimates", "contrasts"), width = 0.6, show_pval =
FALSE),
diagnostic_plot = list(type = "fit-residual", z_threshold = NULL),
ggplot2_args = teal.widgets::ggplot2_args()
)
a list of expressions to generate a table or plot object.
(character)
parent analysis data used in teal module, usually this refers to ADSL.
(character)
analysis data used in teal module.
(character)
name of the analysis value variable.
(character)
variable names that can be used as arm_var.
(character)
the level of reference arm in case of arm comparison.
(character)
the level of comparison arm in case of arm comparison.
(logical)
triggers the combination of comparison arms.
(character)
the variable name for subject id.
(character)
variable names that can be used as visit variable. Must be a factor in
dataname.
(character)
names of the covariates variables.
(numeric)
value for the confidence level within the range of (0, 1).
(string)
a string specifying the adjustment method.
(string)
a string specifying the correlation structure, defaults to
"unstructured". See tern.mmrm::build_formula() for more options.
argument from emmeans::emmeans(), "proportional" by default.
(flag)
flag that controls whether optimizer search can use available free cores on the
machine (not default).
(string)
name of fitted MMRM object.
(character)
name of the parameter code variable.
(string)
should the "reduction" (control - treatment, default) or the "increase"
(treatment - control) be shown for the relative change from baseline.
(string)
type of table to output.
(string)
string to display as total column/row label if column/row is
enabled (see add_total). Defaults to "All Patients". To set a new default total_label to
apply in all modules, run set_default_total_label("new_default").
(basic_table_args) optional
object created by teal.widgets::basic_table_args()
with settings for the module table. The argument is merged with option teal.basic_table_args and with default
module arguments (hard coded in the module body).
For more details, see the vignette: vignette("custom-basic-table-arguments", package = "teal.widgets").
(named list)
a list of controls for LS means plot.
See more tern.mmrm::g_mmrm_lsmeans().
(named list)
a list of controls for diagnostic_plot.
See more tern.mmrm::g_mmrm_diagnostic().
(ggplot2_args) optional
object created by teal.widgets::ggplot2_args() with settings
for the module plot. The argument is merged with option teal.ggplot2_args and with default module arguments
(hard coded in the module body).
For more details, see the vignette: vignette("custom-ggplot2-arguments", package = "teal.widgets").
template_mmrm_tables(): Creates valid expressions to generate MMRM LS means, covariance matrix,
fixed effects, and diagnostic tables.
template_mmrm_plots(): Creates valid expressions to generate MMRM LS means and
diagnostic plots.
tm_a_mmrm()