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teal.modules.clinical (version 0.10.0)

template_logistic: Template: Logistic Regression

Description

Creates a valid expression to generate a logistic regression table.

Usage

template_logistic(
  dataname,
  arm_var,
  aval_var,
  paramcd = lifecycle::deprecated(),
  label_paramcd,
  cov_var,
  interaction_var,
  ref_arm,
  comp_arm,
  topleft = "Logistic Regression",
  conf_level = 0.95,
  combine_comp_arms = FALSE,
  responder_val = c("CR", "PR"),
  at = NULL,
  basic_table_args = teal.widgets::basic_table_args()
)

Value

a list of expressions to generate a table or plot object.

Arguments

dataname

(character)
analysis data used in teal module.

arm_var

(character)
variable names that can be used as arm_var. To fit a logistic model with no arm/treatment variable, set to NULL.

aval_var

(character)
name of the analysis value variable.

paramcd

[Deprecated] The paramcd argument is not used in this function.

label_paramcd

(character)
label of response parameter value to print in the table title.

cov_var

(character)
names of the covariates variables.

interaction_var

(character)
names of the variables that can be used for interaction variable selection.

ref_arm

(character)
the level of reference arm in case of arm comparison.

comp_arm

(character)
the level of comparison arm in case of arm comparison.

topleft

(character)
text to use as top-left annotation in the table.

conf_level

(numeric)
value for the confidence level within the range of (0, 1).

combine_comp_arms

(logical)
triggers the combination of comparison arms.

responder_val

(character)
values of the responder variable corresponding with a successful response.

at

(numeric or NULL)
optional values for the interaction variable. Otherwise the median is used.

basic_table_args

(basic_table_args) optional
object created by teal.widgets::basic_table_args() with settings for the module table. The argument is merged with option teal.basic_table_args and with default module arguments (hard coded in the module body). For more details, see the vignette: vignette("custom-basic-table-arguments", package = "teal.widgets").

See Also

tm_t_logistic()