teal.modules.clinical (version 0.9.0)

template_a_gee: Template for Generalized Estimating Equations (GEE) analysis module

Description

Creates a valid expression to generate an analysis table using Generalized Estimating Equations (GEE).

Usage

template_a_gee(
  output_table,
  data_model_fit = "ANL",
  dataname_lsmeans = "ANL_ADSL",
  input_arm_var = "ARM",
  ref_group = "A: Drug X",
  aval_var,
  id_var,
  arm_var,
  visit_var,
  split_covariates,
  cor_struct,
  conf_level = 0.95,
  basic_table_args = teal.widgets::basic_table_args()
)

Value

a list of expressions to generate a table or plot object.

Arguments

output_table

(character)
type of output table ("t_gee_cov", "t_gee_coef", "t_gee_lsmeans").

data_model_fit

(character)
dataset used to fit the model by tern.gee::fit_gee().

dataname_lsmeans

(character)
dataset used for alt_counts_df argument of rtables::build_table().

aval_var

(character)
name of the analysis value variable.

id_var

(character)
the variable name for subject id.

arm_var

(character)
variable names that can be used as arm_var.

visit_var

(character)
variable names that can be used as visit variable. Must be a factor in dataname.

split_covariates

(character)
vector of names of variables to use as covariates in tern.gee::vars_gee().

cor_struct

(character)
assumed correlation structure in tern.gee::fit_gee.

conf_level

(numeric)
value for the confidence level within the range of (0, 1).

basic_table_args

optional, (basic_table_args)
object created by teal.widgets::basic_table_args() with settings for the module table. The argument is merged with option teal.basic_table_args and with default module arguments (hard coded in the module body). For more details, see the vignette: vignette("custom-basic-table-arguments", package = "teal.widgets").

See Also

tm_a_gee()