ex_opt

Example output from the `opt_mbp()` function, finding the optimal mbp for
each group and desired convergence threshold.

datasets

Analyze telemetry datasets generalized to allow
any technology. The filtering steps check for false positives caused by
reflected transmissions from surfaces and false pings from other noise
generating equipment. The filters are based on JSATS filtering algorithms
found in package 'filteRjsats' <https://CRAN.R-project.org/package=filteRjsats>
but have been generalized to allow the user to define many of the filtering
variables. Additionally, this package contains scripts used to help identify
an optimal maximum blanking period as defined in Capello et al (2015)
<doi:10.1371/journal.pone.0134002>. The functions were written according to
their manuscript description, but have not been reviewed by the authors for
accuracy. It is included here as is, without warranty.

Taylor Spaulding

telemetR

Filter and Analyze Generalised Telemetry Data from Organisms

ex_opt function

## `ex_opt`
A data frame with 1 rows and 5 columns:<dl>
 <dt>fish_type</dt>
<dd>Generally a strain, run, and species of fish (e.g.
 Nimbus Fall Chinook = Fall-run Chinook Salmon from Nimbus Hatchery)</dd> <dt>min_val</dt>
<dd>The minimum rSSR value</dd> <dt>max_val</dt>
<dd>The maximum rSSR value</dd> <dt>threshold</dt>
<dd>the rSSR value which represents the `thresh_level` cutoff
 for estimating convergence</dd> <dt>thresh_level</dt>
<dd>The desired convergence level (100-x)</dd> <dt>opt_mbp</dt>
<dd>The identified optimum mbp for the given threshold and group</dd>
</dl>

Format

Example Optimum Maximum Blanking Period — ex_opt

## `ex_opt`
A data frame with 1 rows and 5 columns:<dl>
 <dt>fish_type</dt>
<dd>Generally a strain, run, and species of fish (e.g.
 Nimbus Fall Chinook = Fall-run Chinook Salmon from Nimbus Hatchery)</dd>

 <dt>min_val</dt>
<dd>The minimum rSSR value</dd>

 <dt>max_val</dt>
<dd>The maximum rSSR value</dd>

 <dt>threshold</dt>
<dd>the rSSR value which represents the `thresh_level` cutoff
 for estimating convergence</dd>

 <dt>thresh_level</dt>
<dd>The desired convergence level (100-x)</dd>

 <dt>opt_mbp</dt>
<dd>The identified optimum mbp for the given threshold and group</dd>


</dl>

ex_opt: Example Optimum Maximum Blanking Period

Description

Usage

Arguments

Format