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templateICAr (version 0.9.1)

plot.template.nifti: Plot template

Description

Based on oro.nifti::image.

Usage

# S3 method for template.nifti
plot(
  x,
  stat = c("mean", "sd", "var"),
  plane = c("axial", "sagittal", "coronal"),
  n_slices = 9,
  slices = NULL,
  var_method = c("non-negative", "unbiased"),
  ...
)

Value

The plot

Arguments

x

The template from estimate_template.nifti

stat

"mean" (default), "sd", or "var". ("sd" will show the square root of the variance template.)

plane, n_slices, slices

Anatomical plane and which slice indices to show. Default: 9 axial slices.

var_method

"non-negative" (default) or "unbiased"

...

Additional arguments to oro.nifti::image

Details

Consider using struct_template to obtain the 3D volumes to plot with a different viewer function (e.g. from oro.nifti) if desired.