tempoR (version 1.0.4.4)

loadGCT: Load a Gene Cluster Text formatted file

Description

loadGCT loads a Gene Cluster Text formatted file from a text file to the data structure used by TEMPO. A .gct file is organized as described at the BROAD site.

Usage

loadGCT(target)

Arguments

target

a string indicating the location of the .gct file

Value

a matrix with sample ids as row names and gene ids as column names

Examples

# NOT RUN {
# An example gene expression data set is included in the package in .gct format
exampleDataPath = file.path(path.package("tempoR"),"gse32472Example.gct")
exampleData = loadGCT(exampleDataPath)
# }