tenm (version 0.5.1)

tdf2swd: Temporal data.frame to Samples With Data format

Description

Converts a temporal data.frame to Samples With Data (SWD) table for use with other modeling platforms such as MaxEnt.

Usage

tdf2swd(this_species, sp_name = "sp")

Value

A data.frame formatted as Samples With Data (SWD) table.

Arguments

this_species

An object of class sp.temporal.env (see ex_by_date ) or sp.temporal.bg (see bg_by_date).

sp_name

Character vector specifying the species name.

Examples

# \donttest{
library(tenm)
data("abronia")
tempora_layers_dir <- system.file("extdata/bio",package = "tenm")
abt <- tenm::sp_temporal_data(occs = abronia,
                              longitude = "decimalLongitude",
                              latitude = "decimalLatitude",
                              sp_date_var = "year",
                              occ_date_format="y",
                              layers_date_format= "y",
                              layers_by_date_dir = tempora_layers_dir,
                              layers_ext="*.tif$")
abtc <- tenm::clean_dup_by_date(abt,threshold = 10/60)
future::plan("multisession",workers=2)
abex <- tenm::ex_by_date(this_species = abtc,
                         train_prop=0.7)
abbg <- tenm::bg_by_date(abex,
                         buffer_ngbs=10,n_bg=50000)
future::plan("sequential")
# SWD table for occurrence records
occ_swd <- tdf2swd(this_species=abex,sp_name="abro_gram")
# SWD table for background data
bg_swd <- tdf2swd(this_species=abbg)
# }