prepare_for_bioc_runit

Prepare a BioC/RUnit package for testing
Detaches common BioC infrastructure packages (if attached) and load_all() the target
package before RUnit tests. Also clears R_TESTS to avoid interference from the check harness.

internal

A reliable and validated tool that calculates unit test coverage for R packages with standard testing frameworks and non-standard testing frameworks.

Edward Gillian

test.assessr

Assessing Package Test Reliability and Quality

Hugo Bottois

Paulin Charliquart

Andre Couturier

Sanofi 

prepare_for_bioc_runit function

<dl><dt>pkg_name</dt>
<dd>Character. Package name.</dd>
<dt>pkg_source_path</dt>
<dd>Character. Path to package source.</dd>
<dt>detach_bioc_infra</dt>
<dd>Logical. If TRUE (default for BioC packages), detach
IRanges, S4Vectors, BiocGenerics. Set to FALSE for RUnit-only packages.</dd></dl>

Arguments

Prepare a BioC/RUnit package for testing
Detaches common BioC infrastructure packages (if attached) and load_all() the target
package before RUnit tests. Also clears R_TESTS to avoid interference from the check harness. — prepare_for_bioc_runit

<dl>

<dt>pkg_name</dt>
<dd>Character. Package name.</dd>


<dt>pkg_source_path</dt>
<dd>Character. Path to package source.</dd>


<dt>detach_bioc_infra</dt>
<dd>Logical. If TRUE (default for BioC packages), detach
IRanges, S4Vectors, BiocGenerics. Set to FALSE for RUnit-only packages.</dd>

</dl>

Prepare a BioC/RUnit package for testing
Detaches common BioC infrastructure packages (if attached) and load_all() the target
package before RUnit tests. Also clears R_TESTS to avoid interference from the check harness.

prepare_for_bioc_runit: Prepare a BioC/RUnit package for testing Detaches common BioC infrastructure packages (if attached) and load_all() the target package before RUnit tests. Also clears R_TESTS to avoid interference from the check harness.

Description

Usage

Arguments