Plot the MAP Tree for each height encountered by the Markov Chain
Plot the maximum a' posteriori (MAP) tree as a function of tree height, and show the log posterior probabilities for comparison.
tgp.trees(out, heights = NULL, main = NULL, ...)
"tgp"-class object which is the output of one the model functions with tree support (e.g.
Index vector of length less than
length(out$trees)describing trees to plot by their height. Default (
NULL) is to plot all trees, one for each height encountered when sampling from the Markov chain of the tree posterior. This is equivalent to
heights = out$posts$height. Specifying
heights = "map"causes (only) the maximum a' posteriori (MAP) height tree to be plotted
Optional character string to add to the main title of the plot
Extra arguments to the
draw.treefunction from maptree
The maximum a' posteriori (MAP) tree encountered at each height
(in the MCMC chain) is plotted, and the log posterior probabilities
are shown for comparison. The text at the branches in the tree show
the splitting variable and value. The text at the leaves show the
number of input data points (
Z) that fall
into the region(s) along with an estimate of the variability therein.
The only output of this function is beautiful tree diagrams.
Plotting trees that the maptree library is installed, which itself requires that the combinat library also be installed.
vignette("tgp") and the examples sections of the functions
under “See Also”, below