WWTP_Impact

<p>WWTP_Impact is a phyloseq object containing 16S rDNA amplicon sequencing data
from samples collected at 6 sites on 2 days (12 total samples) along
Wissahickon Creek and Sandy Run in southeastern Pennsylvania, USA. Sequencing
data was processed as described in Price et. al. (2017), and combined with
chemical data to create a phyloseq object. The raw data and scripts used to
generate this phyloseq object (as well as the phyloseq object itself) can be
obtained from the author's GitHub repository (see url below).</p>

datasets

An approach to the visualization, analysis, and interpretation of
(microbial) community composition data, especially those originating from
amplicon sequencing. Analysis techniques include constrained and unconstrained
ordination and visualizing taxonomic abundances and spatial patterns, among
others. Methods intended to assist bioinformaticians and ecologists in
selecting read trimming by quality scores and preprocessing/denoising of
datasets are also provided.

Stephen Woloszynek

theseus

Analysis and Visualization Tools for Microbial Community Data

Jacob Price

WWTP_Impact function

<p>A phyloseq object containing sample_data, otu_table, tax_table, and
  phy_tree slots.</p>

WWTP_Impact: Freshwater stream microbiome data

Description

Usage

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Format

References