import-fs-suma

import_fs

import_suma

Import 'T1-MRI', surface files, curvature/'sulcus', atlas, and
'Talairach' transform matrix into 'json' format. These functions are not
intended to be called directly, use <code>import_from_freesurfer</code>
instead.

A fast, interactive cross-platform, and easy to share
'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or
'AFNI/SUMA' surfaces. The viewer widget can be either standalone or
embedded into 'R-shiny' applications. The standalone version only require
a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox',
'Safari'), and can be inserted into any websites. The 'R-shiny'
support allows the 3D viewer to be dynamically generated from reactive user
inputs. This feature has been fully adopted by 'RAVE'
<https://openwetware.org/wiki/RAVE>, an interactive toolbox to
analyze 'iEEG' data. Documentation about 'threeBrain' is provided
by <https://dipterix.org/threeBrain/> and several vignettes included
in this package. To cite the package, please check our 'NeuroImage' paper
by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>),
or see 'citation("threeBrain")' for details.

Zhengjia Wang

threeBrain

3D Brain Visualization

John Magnotti

Xiang Zhang

Brian Metzger

Elizabeth Nesbitt

Meng Li

Michael Beauchamp

import-fs-suma function

<dl><dt>subject_name</dt>
<dd>character, subject code</dd>
<dt>fs_path</dt>
<dd>path to 'FreeSurfer' folder</dd>
<dt>quiet, ...</dt>
<dd>passed from or to other methods.</dd>
<dt>dtype</dt>
<dd>data type to import, choices are <code>'T1'</code>, <code>'surface'</code>,
<code>'curv'</code>, <code>'atlas_volume'</code>, <code>'atlas_surface'</code>, <code>'xform'</code></dd>
<dt>sub_type</dt>
<dd>detailed files to import. <code>'atlas_surface'</code>
is not supported for now</dd>
<dt>hemisphere</dt>
<dd>which hemisphere to import, ignored when <code>dtype</code> is in
<code>'T1'</code>, <code>'atlas_volume'</code>, <code>'atlas_surface'</code>, <code>'xform'</code>.</dd></dl>

Arguments

Import 'FreeSurfer' or 'SUMA' files into the viewer structure — import-fs-suma

<dl>

<dt>subject_name</dt>
<dd>character, subject code</dd>


<dt>fs_path</dt>
<dd>path to 'FreeSurfer' folder</dd>


<dt>quiet, ...</dt>
<dd>passed from or to other methods.</dd>


<dt>dtype</dt>
<dd>data type to import, choices are <code>'T1'</code>, <code>'surface'</code>,
<code>'curv'</code>, <code>'atlas_volume'</code>, <code>'atlas_surface'</code>, <code>'xform'</code></dd>


<dt>sub_type</dt>
<dd>detailed files to import. <code>'atlas_surface'</code>
is not supported for now</dd>


<dt>hemisphere</dt>
<dd>which hemisphere to import, ignored when <code>dtype</code> is in
<code>'T1'</code>, <code>'atlas_volume'</code>, <code>'atlas_surface'</code>, <code>'xform'</code>.</dd>

</dl>

Import 'FreeSurfer' or 'SUMA' files into the viewer structure

import-fs-suma: Import 'FreeSurfer' or 'SUMA' files into the viewer structure

Description

Usage

Value

Arguments