tidyHeatmap (version 1.8.1)

add_tile: Adds a tile annotation layer to a `InputHeatmap`, that on evaluation creates a `ComplexHeatmap`

Description

add_tile() from a `InputHeatmap` object, adds a tile annotation layer.

Usage

add_tile(.data, .column, palette = NULL, size = NULL, ...)
# S4 method for InputHeatmap
add_tile(.data, .column, palette = NULL, size = NULL, ...)

Arguments

.data

A `tbl_df` formatted as | <ELEMENT> | <FEATURE> | <VALUE> | <...> |

.column

Vector of quotes

palette

A character vector of colors, or a function such as colorRamp2 (see examples).

size

A grid::unit object, e.g. unit(2, "cm"). This is the height or width of the annotation depending on the orientation.

...

The arguments that will be passed to top_annotation or left_annotation of the ComplexHeatmap container

Value

A `InputHeatmap` object that gets evaluated to a `ComplexHeatmap`

A `InputHeatmap` object that gets evaluated to a `ComplexHeatmap`

Details

maturing

It uses `ComplexHeatmap` as visualisation tool.

Examples

# NOT RUN {
library(dplyr)

hm = 
  tidyHeatmap::N52 %>%
  tidyHeatmap::heatmap(
    .row = symbol_ct,
    .column = UBR,
    .value = `read count normalised log`
)

hm %>% add_tile(CAPRA_TOTAL)


hm %>% add_tile(inflection, palette = circlize::colorRamp2(c(0, 3,10), c("white", "green", "red")))

# }