bpd_phy

Infants who required mechanical ventilation had tracheal aspirates samples collected at 7, 14, and 21 days of age (+/- 48 hours). Infants who were mechanically ventilated and had at least one tracheal aspirate collected were included in this study. Subjects were required to be enrolled within 7 days of age. Bacterial profiles were determined by broad-range amplification and sequence analysis of 16S rRNA genes.

datasets

A reliable alternative to popular microbiome analysis R packages. We provide standard tools as well as novel extensions on standard analyses to improve interpretability and the analyst<e2><80><99>s ability to communicate results, all while maintaining object malleability to encourage open source collaboration.

Charlie Carpenter

tidyMicro

A Pipeline for Microbiome Analysis and Visualization

Dan Frank

Kayla Williamson

Rachel Johnson

bpd_phy function

A 15x75 data.frame<dl class="dl-horizontal">
<dt><code>OTU_Name</code></dt><dd>A character vector of phylum level OTU names</dd>
<dt><code>Lib names</code></dt><dd>The following columns are the sequencing counts for each library with library names</dd>
</dl>

Format

An OTU table of phylum level taxa counts study — bpd_phy

A 15x75 data.frame<dl class='dl-horizontal'>
<dt><code>OTU_Name</code></dt><dd>A character vector of phylum level OTU names</dd>
<dt><code>Lib names</code></dt><dd>The following columns are the sequencing counts for each library with library names</dd>
</dl>

bpd_phy: An OTU table of phylum level taxa counts study

Description

Usage

Arguments

Format