mrsa_gen

Data from a study to define the nasal microbiome of hospital inpatients who are persistently colonized with methicillin-resistant Staphylococcus aureus (MRSA) compared with matched, non-colonized controls. See original paper for matching proceedure.

datasets

A reliable alternative to popular microbiome analysis R packages. We provide standard tools as well as novel extensions on standard analyses to improve interpretability and the analyst<e2><80><99>s ability to communicate results, all while maintaining object malleability to encourage open source collaboration.

Charlie Carpenter

tidyMicro

A Pipeline for Microbiome Analysis and Visualization

Dan Frank

Kayla Williamson

Rachel Johnson

mrsa_gen function

A 34x75 data.frame<dl class="dl-horizontal">
 <dt><code>OTU_Name</code></dt><dd>A character vector of class level OTU names</dd>
 <dt><code>Lib names</code></dt><dd>The following columns are the sequencing counts for each library with library names</dd>
</dl>

Format

An OTU table of genus level taxa counts from a MRSA study — mrsa_gen

A 34x75 data.frame<dl class='dl-horizontal'>
 <dt><code>OTU_Name</code></dt><dd>A character vector of class level OTU names</dd>
 <dt><code>Lib names</code></dt><dd>The following columns are the sequencing counts for each library with library names</dd>
</dl>

mrsa_gen: An OTU table of genus level taxa counts from a MRSA study

Description

Usage

Arguments

Format