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tidytree (version 0.1.5)

A Tidy Tool for Phylogenetic Tree Data Manipulation

Description

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

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Install

install.packages('tidytree')

Monthly Downloads

59,498

Version

0.1.5

License

Artistic-2.0

Issues

Pull Requests

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Maintainer

Guangchuang Yu

Last Published

December 14th, 2017

Functions in tidytree (0.1.5)

as.treedata

as.treedata
offspring

offspring
child

child
get_tree_data

get_tree_data
groupClade

groupClade
treedata-class

Class "treedata" This class stores phylogenetic tree with associated data
groupOTU

groupOTU
reexports

Objects exported from other packages
MRCA

MRCA
rootnode

rootnode
parent

parent
ancestor

ancestor
show

show method
sibling

sibling
get.fields

get.fields method