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tidytree (version 0.2.7)

A Tidy Tool for Phylogenetic Tree Data Manipulation

Description

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

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Version

Install

install.packages('tidytree')

Monthly Downloads

59,498

Version

0.2.7

License

Artistic-2.0

Maintainer

Guangchuang Yu

Last Published

September 12th, 2019

Functions in tidytree (0.2.7)

get_tree_data

get_tree_data
as.treedata

as.treedata
get.data

get.data method
MRCA

MRCA
groupOTU

groupOTU
groupClade

groupClade
child

child
get.fields

get.fields method
ancestor

ancestor
nodeid

nodeid
treedata

treedata
parent

parent
reexports

Objects exported from other packages
treedata-class

Class "treedata" This class stores phylogenetic tree with associated data
sibling

sibling
rootnode

rootnode
show

show method
offspring

offspring
nodelab

nodelab