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tidytree (version 0.2.9)

A Tidy Tool for Phylogenetic Tree Data Manipulation

Description

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

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Version

Install

install.packages('tidytree')

Monthly Downloads

59,498

Version

0.2.9

License

Artistic-2.0

Maintainer

Guangchuang Yu

Last Published

October 28th, 2019

Functions in tidytree (0.2.9)

get.fields

get.fields method
sibling

sibling
treedata-class

Class "treedata" This class stores phylogenetic tree with associated data
groupClade

groupClade
groupOTU

groupOTU
nodeid

nodeid
offspring

offspring
nodelab

nodelab
rootnode

rootnode
ancestor

ancestor
MRCA

MRCA
show

show method
reexports

Objects exported from other packages
parent

parent
treedata

treedata
get.data

get.data method
as.treedata

as.treedata
child

child
get_tree_data

get_tree_data