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tidytree (version 0.3.0)

A Tidy Tool for Phylogenetic Tree Data Manipulation

Description

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

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Version

Install

install.packages('tidytree')

Monthly Downloads

59,498

Version

0.3.0

License

Artistic-2.0

Maintainer

Guangchuang Yu

Last Published

November 21st, 2019

Functions in tidytree (0.3.0)

nodeid

nodeid
treedata

treedata
nodelab

nodelab
offspring

offspring
groupClade

groupClade
get_tree_data

get_tree_data
reexports

Objects exported from other packages
parent

parent
ancestor

ancestor
rootnode

rootnode
show

show method
groupOTU

groupOTU
as.treedata

as.treedata
child

child
get.fields

get.fields method
MRCA

MRCA
get.data

get.data method
sibling

sibling
treedata-class

Class "treedata" This class stores phylogenetic tree with associated data