Learn R Programming

⚠️There's a newer version (0.4.6) of this package.Take me there.

tidytree (version 0.3.1)

A Tidy Tool for Phylogenetic Tree Data Manipulation

Description

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Copy Link

Version

Install

install.packages('tidytree')

Monthly Downloads

59,498

Version

0.3.1

License

Artistic-2.0

Maintainer

Guangchuang Yu

Last Published

December 14th, 2019

Functions in tidytree (0.3.1)

get.fields

get.fields method
treedata-class

Class "treedata" This class stores phylogenetic tree with associated data
sibling

sibling
child

child
show

show method
rootnode

rootnode
parent

parent
nodelab

nodelab
offspring

offspring
reexports

Objects exported from other packages
treedata

treedata
MRCA

MRCA
as.treedata

as.treedata
groupOTU

groupOTU
ancestor

ancestor
get.data

get.data method
nodeid

nodeid
get_tree_data

get_tree_data
groupClade

groupClade