treedata-class

show,treedata-method

Class "treedata"
This class stores phylogenetic tree with associated data

classes

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Guangchuang Yu

tidytree

A Tidy Tool for Phylogenetic Tree Data Manipulation

Bradley Jones

Zebulun Arendsee

treedata-class function

<dl class="dl-horizontal">
<dt><code>file</code></dt><dd>tree file</dd></dl><dt><code>treetext</code></dt><dd>newick tree string</dd><dt><code>phylo</code></dt><dd>phylo object for tree structure</dd><dt><code>data</code></dt><dd>associated data</dd><dt><code>extraInfo</code></dt><dd>extra information, reserve for merge_tree</dd><dt><code>tip_seq</code></dt><dd>tip sequences</dd><dt><code>anc_seq</code></dt><dd>ancestral sequences</dd><dt><code>seq_type</code></dt><dd>sequence type, one of NT or AA</dd><dt><code>tipseq_file</code></dt><dd>tip sequence file</dd><dt><code>ancseq_file</code></dt><dd>ancestral sequence file</dd><dt><code>info</code></dt><dd>extra information, e.g. metadata, software version etc.</dd>

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Class "treedata"
This class stores phylogenetic tree with associated data — treedata-class

Class "treedata"
This class stores phylogenetic tree with associated data

treedata-class: Class "treedata" This class stores phylogenetic tree with associated data

Description

Arguments

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