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tidytree (version 0.3.3)

A Tidy Tool for Phylogenetic Tree Data Manipulation

Description

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

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Version

Install

install.packages('tidytree')

Monthly Downloads

59,498

Version

0.3.3

License

Artistic-2.0

Maintainer

Guangchuang Yu

Last Published

April 2nd, 2020

Functions in tidytree (0.3.3)

get_tree_data

get_tree_data
child

child
MRCA

MRCA
sibling

sibling
ancestor

ancestor
nodelab

nodelab
offspring

offspring
groupOTU

groupOTU
nodeid

nodeid
treedata-class

Class "treedata" This class stores phylogenetic tree with associated data
get.data

get.data method
get.fields

get.fields method
treedata

treedata
rootnode

rootnode
show

show method
reexports

Objects exported from other packages
groupClade

groupClade
as.treedata

as.treedata
parent

parent