tidytree v0.3.3

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A Tidy Tool for Phylogenetic Tree Data Manipulation

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Functions in tidytree

Name Description
get_tree_data get_tree_data
child child
MRCA MRCA
sibling sibling
ancestor ancestor
nodelab nodelab
offspring offspring
groupOTU groupOTU
nodeid nodeid
treedata-class Class "treedata" This class stores phylogenetic tree with associated data
get.data get.data method
get.fields get.fields method
treedata treedata
rootnode rootnode
show show method
reexports Objects exported from other packages
groupClade groupClade
as.treedata as.treedata
parent parent
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Vignettes of tidytree

Name
tidytree.Rmd
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Details

VignetteBuilder knitr
ByteCompile true
License Artistic-2.0
URL https://yulab-smu.github.io/treedata-book/
BugReports https://github.com/YuLab-SMU/tidytree/issues
Encoding UTF-8
LazyData true
RoxygenNote 7.0.2
NeedsCompilation no
Packaged 2020-04-02 02:51:03 UTC; ygc
Repository CRAN
Date/Publication 2020-04-02 09:10:03 UTC

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