groupClade

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Guangchuang Yu

tidytree

A Tidy Tool for Phylogenetic Tree Data Manipulation

Bradley Jones

Zebulun Arendsee

groupClade function

<dl><dt>.data</dt>
<dd>tree object (phylo, treedata, tbl_tree, ggtree etc.)</dd>
<dt>.node</dt>
<dd>selected nodes</dd>
<dt>group_name</dt>
<dd>character the name of the group cluster, default is <code>group</code>.</dd>
<dt>overlap</dt>
<dd>character one of <code>overwrite</code>,<code>origin</code> and <code>abandon</code>,
default is <code>overwrite</code>.</dd>
<dt>...</dt>
<dd>additional parameter</dd></dl>

Arguments

Author

groupClade — groupClade

<dl>

<dt>.data</dt>
<dd>tree object (phylo, treedata, tbl_tree, ggtree etc.)</dd>


<dt>.node</dt>
<dd>selected nodes</dd>


<dt>group_name</dt>
<dd>character the name of the group cluster, default is <code>group</code>.</dd>


<dt>overlap</dt>
<dd>character one of <code>overwrite</code>,<code>origin</code> and <code>abandon</code>,
default is <code>overwrite</code>.</dd>


<dt>...</dt>
<dd>additional parameter</dd>

</dl>

groupClade: groupClade

Description

Usage

Value

Arguments

Author