root.treedata

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Guangchuang Yu

tidytree

A Tidy Tool for Phylogenetic Tree Data Manipulation

Bradley Jones

Zebulun Arendsee

root.treedata function

<dl><dt>phy</dt>
<dd>tree object</dd>
<dt>outgroup</dt>
<dd>a vector of mode numeric or character specifying the new outgroup</dd>
<dt>node</dt>
<dd>node to reroot</dd>
<dt>edgelabel</dt>
<dd>a logical value specifying whether to treat node labels as
edge labels and thus eventually switching them so that they are associated
with the correct edges.</dd>
<dt>...</dt>
<dd>additional parameters passed to ape::root.phylo</dd></dl>

Arguments

root — root.treedata

<dl>

<dt>phy</dt>
<dd>tree object</dd>


<dt>outgroup</dt>
<dd>a vector of mode numeric or character specifying the new outgroup</dd>


<dt>node</dt>
<dd>node to reroot</dd>


<dt>edgelabel</dt>
<dd>a logical value specifying whether to treat node labels as
edge labels and thus eventually switching them so that they are associated
with the correct edges.</dd>


<dt>...</dt>
<dd>additional parameters passed to ape::root.phylo</dd>

</dl>

root.treedata: root

Description

Usage

Value

Arguments