SampleGenotype

<p>A <code>data.frame</code> of genotype inference results from inferGenotype
after novel allele detection via findNovelAlleles.
Source data was a collection of V(D)J immunoglobulin sequences derived from a single
individual (PGP1), sequenced on the Roche 454 platform, and assigned by
IMGT/HighV-QUEST to IGHV1 family alleles.</p>

data

Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>,
Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.

Susanna Marquez

tigger

Infers Novel Immunoglobulin Alleles from Sequencing Data

Daniel Gadala-Maria

Moriah Cohen

Jason Vander Heiden

Gur Yaari

Steven Kleinstein

SampleGenotype function

<p>A <code>data.frame</code> where rows correspond to genes carried by an
individual and columns lists the alleles of those genes and their counts.</p>

Format

Example genotype inferrence results — SampleGenotype

Example genotype inferrence results

SampleGenotype: Example genotype inferrence results

Description

Arguments

Format

References

See Also