insertPolymorphisms

<code>insertPolymorphisms</code> replaces nucleotides in the desired locations of a
provided sequence.

Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>,
Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.

Susanna Marquez

tigger

Infers Novel Immunoglobulin Alleles from Sequencing Data

Daniel Gadala-Maria

Moriah Cohen

Jason Vander Heiden

Gur Yaari

Steven Kleinstein

insertPolymorphisms function

<dl><dt>sequence</dt>
<dd>starting nucleotide sequence.</dd>
<dt>positions</dt>
<dd>numeric vector of positions which to be changed.</dd>
<dt>nucleotides</dt>
<dd>character vector of nucleotides to which to change the
positions.</dd></dl>

Arguments

Insert polymorphisms into a nucleotide sequence — insertPolymorphisms

<dl>

<dt>sequence</dt>
<dd>starting nucleotide sequence.</dd>


<dt>positions</dt>
<dd>numeric vector of positions which to be changed.</dd>


<dt>nucleotides</dt>
<dd>character vector of nucleotides to which to change the
positions.</dd>

</dl>

insertPolymorphisms: Insert polymorphisms into a nucleotide sequence

Description

Usage

Value

Arguments

Examples