drosophila_gpsim_fragment


  Four genes from the 12 time point Drosophila embryonic development
  Affymetrix microarray gene expression data set by Tomancak et
  al. (2002).<p></p><p>  The data has been processed using <code>mmgmos</code> from <code>puma</code>
  package and <code><a rd-options="" href="/link/processData?package=tigre&version=1.26.0" data-mini-rdoc="tigre::processData">processData</a></code>.
</p>

datasets

The tigre package implements our methodology of Gaussian
process differential equation models for analysis of gene
expression time series from single input motif networks. The
package can be used for inferring unobserved transcription
factor (TF) protein concentrations from expression measurements
of known target genes, or for ranking candidate targets of a
TF.

Antti Honkela

tigre

Transcription factor Inference through Gaussian process
Reconstruction of Expression

drosophila_gpsim_fragment function

An <code>ExpressionTimeSeries</code> object with
  3 repeats of the 12 time points for 4 probes.

Format

<a href="/link/ftp%3A%2F%2Fftp.fruitfly.org%2Fpub%2Fembryo_tc_array_data%2F?package=tigre&version=1.26.0" data-mini-rdoc="tigre::ftp://ftp.fruitfly.org/pub/embryo_tc_array_data/">ftp://ftp.fruitfly.org/pub/embryo_tc_array_data/</a>

Source

Four genes from the 12 time point Drosophila embryonic development
  Affymetrix microarray gene expression data set by Tomancak et
  al. (2002).

  The data has been processed using <code>mmgmos</code> from <code>puma</code>
  package and <code><a href="processData" rd-options="">processData</a></code>.

drosophila_gpsim_fragment: Fragment of 12 time point Drosophila embryonic development microarray gene expression time series

Description

Usage

Arguments

Format

Source

References