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tigreBrowserWriter

An R package for writing tigreBrowser databases.

tigreBrowser

tigreBrowser is a web-based tool for browsing independent model fits, such as Gaussian process models fitted for each gene or other genomic element. The browser is available at https://github.com/PROBIC/tigreBrowser

An example of the browser illustrating the results of our recent paper (Honkela et al., 2015, doi:10.1073/pnas.1420404112) can be found at https://www.cs.helsinki.fi/u/ahonkela/pol2rna/

History

Version 0.1.5 (7 June 2018)

  • Eliminate an RSQLite warning message

Version 0.1.4 (4 December 2016)

  • Compatibility update with new RSQLite

Version 0.1.3 (16 November 2016)

  • Add a function to write image data directly to db

Version 0.1.2 (26 October 2016)

  • Initial version released in CRAN

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Install

install.packages('tigreBrowserWriter')

Monthly Downloads

165

Version

0.1.5

License

AGPL-3

Issues

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Maintainer

Antti Honkela

Last Published

June 7th, 2018

Functions in tigreBrowserWriter (0.1.5)

insertSupplementaryData

Insert supplementary data
insertZScores

Insert data z-scores used for filtering
closeDb

Finalise and close the database
initializeDb

Create and initialize a database
insertFigures

Insert figure links
insertResults

Insert results
insertAliases

Insert aliases
insertFigureData

Insert figure data directly to the database