initialize,contHMM-method

new,contHMM-method

A character string specifying the class of the object to be created. In this case "contHMM".

Class

A list with one object of class <code>discDist</code> for each state of the model. These are used as transition probabilities.

transition

A list with one object of class <code>contDist</code> for each state of the model. These are used as emission distributions.

emission

An object of class <code>discDist</code> or <code>NULL</code>. This is used as the initial state distribution.

init

Objects of class <code><links4class>contHMM</links4class></code> are created by calling 
 <code>new("contHMM", transition, emission, init)</code>.

methods

initializeHMM-methods

This package provides methods and classes to build HMMs
        that are suitable for the analysis of ChIP-on-chip data. The
        provided parameter estimation methods include the Baum-Welch
        algorithm and Viterbi training as well as a combination of
        both.

initializeHMM-methods: Generate Objects of Class 'hmm'

Description

Usage

Arguments

Details

See Also